S. Ivanovic

Evolution-Aware Deep Reinforcement Learning for Single-Cell DNA Copy Number Calling

DeepCopy improves haplotype-specific copy number calling in single-cell DNA sequencing by incorporating evolutionary constraints, leading to more accurate and biologically plausible CNA phylogenies.

Modeling and Predicting Cancer Clonal Evolution with Reinforcement Learning

CloMu is a reinforcement learning-based model for predicting cancer clonal evolution, outperforming existing methods in mutation causality and fitness prediction.

Some like it hot: adaptation to the urban heat island in common dandelion.

This study shows urban dandelions have adapted to the urban heat island effect by growing more biomass at higher temperatures and requiring less vernalization for flowering.

DNA methylation responses to stress across different plant species

This study compares DNA methylation responses to stress across seven plant species using epiGBS, finding general and species-specific patterns related to genome size and reproduction mode.

DNA methylation in clonal Duckweed lineages (Lemna minor L.) reflects current and historical environmental exposures.

This study shows that high temperature stress induces persistent DNA methylation changes in clonal duckweed lineages, suggesting epigenetic memory across generations.