Author

Sanjay Nagaraj

Arc Research Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Organism:human· 1 Approach:optimal transport· 1 Research Focus:perturbation response prediction· 1 Assay:perturbation screen· 1

Frequent Co-Authors

Abhinav AdduriiD· 1 shared Adam Krejčí· 1 shared Aidan F. WintersiD· 1 shared Alexander DobiniD· 1 shared Alishba Imran· 1 shared Basak EraslaniD· 1 shared Beatrice BevilacquaiD· 1 shared Brian S. PloskyiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperSystems Biology

Abhinav AdduriORCID

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1 paper

Recent·Most cited

Predicting cellular responses to perturbation across diverse contexts with STATE

Abhinav Adduri, Dhruv Gautam, Beatrice Bevilacqua, Mohsen Naghipourfar, Alishba Imran, Rohan Shah, Noam Teyssier, Rishi Verma, Christopher Carpenter, Basak Eraslan, Francis Chalissery, Rajesh Ilango, Vishvak Subramanyam, Chiara Ricci-Tam, Sanjay Nagaraj, , Yusuf Roohani

State, a set-based transformer trained on over 100 million perturbed cells, predicts perturbation responses in new cellular contexts better than mean, linear and deep learning baselines.

Cell · Aug 31, 2026Peer-reviewedSystems Biology✦ In-depth digest