Author

Shafiul Alam

Primary ORCID profile (0000-0001-8684-624X · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Shafiul AlamiD1 paper · University of California, Los Angeles

Biology Disciplines

Click to filter author papers

Bioinformatics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Approach:large language model· 1

Frequent Co-Authors

Ewy A. MathéiD· 1 shared Mahfuza SharminiD· 1 shared Maruf Islam Shuvo· 1 shared Monjura Afrin RumiiD· 1 shared Naznin Akter· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

5 top collaborators · 10 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperBioinformatics

Ewy A. MathéORCID

Mutual co-authors in cluster

Author profile →

1 paper

Recent·Most cited

GEO-BERT: A Retrieval augmented LLM Framework for Intelligent Dataset Retrieval from the Gene Expression Omnibus

Maruf Islam Shuvo, Monjura Afrin Rumi, Naznin Akter, Ewy A. Mathé, Shafiul Alam, Mahfuza Sharmin

GEO-BERT improves dataset retrieval from GEO by using a retrieval-augmented LLM framework with a hierarchical hybrid field-aware system, enhancing semantic search and traditional search performance.

bioRxiv · Oct 21, 2026 · PreprintBioinformatics