Author

Shankar Vembu

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Bioinformatics· 1

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Research Focus:clustering· 1 Approach:deep learning· 1 Organism:human· 1 Research Focus:phylogenetics / evolution· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

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Amit G. DeshwariD· 1 shared Christina K. Yung· 1 shared Gun Ho JangiD· 1 shared Lincoln Stein· 1 shared Quaid MorrisiD· 1 shared

Activity by Year

2015-2015 · peak 1/yr

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5 top collaborators · 10 mutual co-author links

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1 shared paperBioinformatics

Amit G. DeshwarORCID

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1 paper

Recent·Most cited

BioinformaticsGenome BiologyPeer-reviewedFeb 13, 2015

Reconstructing subclonal composition and evolution from whole genome sequencing of tumors

Amit G. Deshwar, Shankar Vembu, Christina K. Yung…·Quaid Morris

This paper introduces PhyloWGS, a method for subclonal reconstruction from whole genome sequencing data, showing it can accurately recover subclonal composition, genotype, and phylogeny using both SSMs and CNVs.

DOI 10.1186/s13059-015-0602-8

humanwhole-genome sequencing