Author

Shantanu Singh

Primary ORCID profile (0000-0003-3150-3025 · 37 papers)Unclaimed ORCID profile · follow to get notified of new preprints

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Shantanu SinghiD37 papers · Broad Institute

Biology Disciplines

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Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Assay:imaging· 2 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Adam N Fraser· 1 shared Anne E Carpenter· 1 shared Anne E. Carpenter· 1 shared Blake Borgeson· 1 shared Cathy Hartland· 1 shared Chadwick T Davis· 1 shared Christopher C Gibson· 1 shared David Dao· 1 shared

Activity by Year

2016-2016 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Adam N Fraser

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2 papers

Recent·Most cited

CellProfiler Analyst: interactive data exploration, analysis, and classification of large biological image sets

David Dao, Adam N Fraser, Jane Hung, Vebjorn Ljosa, Shantanu Singh, Anne E. Carpenter

CellProfiler Analyst 2.0 provides an interactive tool for exploring, visualizing, and classifying large biological image datasets with enhanced machine learning capabilities.

Bioinformatics · Jun 26, 2016Peer-reviewedBioinformatics

Cell Painting, a high-content image-based assay for morphological profiling using multiplexed fluorescent dyes

Mark-Anthony Bray, Shantanu Singh, Han Han, Chadwick T Davis, Blake Borgeson, Cathy Hartland, Maria Kost-Alimova, Sigrun M Gustafsdottir, Christopher C Gibson, Anne E Carpenter

This paper describes a high-content image-based assay called Cell Painting to profile cellular morphology using six fluorescent dyes, enabling the detection of phenotypic changes from chemical or genetic perturbations.

bioRxiv · Apr 28, 2016Systems Biology