Author

Simon Van Deursen

Columbia University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cell Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:scRNA-seq· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Assay:CITE-seq· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Dreyton AmadoriD· 2 shared Jonathan Chin CheongiD· 2 shared Yvon WoappiiD· 2 shared Bianca DumitrascuiD· 1 shared Jose Pomarino Nima· 1 shared Mark D. RobinsoniD· 1 shared Michel Tarnow· 1 shared Ozgur BekeriD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 31 mutual co-author links

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2 shared papersCell Biology

Dreyton AmadorORCID

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2 papers

Recent·Most cited

4D multimodal wound healing atlas reveals organ-level controls of repair phase transitions

Jonathan Chin Cheong, Simon Van Deursen, Dreyton Amador, Shannon Hiner, Yvon Woappi

The paper presents OWHA, a 4D multimodal atlas of wound healing in mice, revealing a conserved Basal IV/SEMA3C circuit that coordinates repair, and shows its disruption in diabetic wounds.

bioRxiv · Jan 16, 2026 · PreprintCell Biology

Patches: A Representation Learning framework for Decoding Shared and Condition-Specific Transcriptional Programs in Wound Healing

Ozgur Beker, Simon Van Deursen, Michel Tarnow, Dreyton Amador, Jonathan Chin Cheong, Jose Pomarino Nima, Mark D. Robinson, Yvon Woappi, Bianca Dumitrascu

Patches decodes shared and condition-specific transcriptional programs in wound healing using scRNA-seq data, revealing universal patterns and treatment-specific changes.

bioRxiv · Dec 23, 2024 · PreprintGenomics