Author

Simon Wong

University of California, San Francisco

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Research Focus:batch correction / integration· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Research Focus:GWAS / association mapping· 1 Assay:GWAS summary statistics· 1

Frequent Co-Authors

Eunice Wan· 2 shared Alexander MarsoniD· 1 shared Caroline Gar-Ling TaiiD· 1 shared Catherine A. SchaeferiD· 1 shared Chun ChaoiD· 1 shared Chun YeiD· 1 shared Clinton L. CarioiD· 1 shared Cristina M. LanataiD· 1 shared

Activity by Year

2017-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersGenomics

Eunice Wan

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2 papers

Recent·Most cited

Association Study of Over 200,000 Subjects Detects Novel Rare Variants, Functional Elements, and Polygenic Architecture of Prostate Cancer Susceptibility

Nima C. Emami, Taylor B. Cavazos, Sara R. Rashkin, Clinton L. Cario, Rebecca E. Graff, Caroline Gar-Ling Tai, Joel Mefford, Linda Kachuri, Eunice Wan, Simon Wong, David S. Aaronson, Joseph C. Presti, Laurel A. Habel, Jun Shan, Dilrini K. Ranatunga, , John S. Witte

This study identifies six novel genetic loci, including two rare variants, and shows that a polygenic risk score strongly predicts prostate cancer risk.

Cancer Research · Dec 8, 2020Peer-reviewedGenomics

Multiplexing droplet-based single cell RNA-sequencing using natural genetic barcodes

Hyun Min Kang, Meena Subramaniam, Sasha Targ, Michelle Ly Thai Nguyen, Lenka Maliskova, Elizabeth E. McCarthy, Eunice Wan, Simon Wong, Lauren E. Byrnes, Cristina M. Lanata, Rachel E. Gate, Sara Mostafavi, Alexander Marson, Noah Zaitlen, Lindsey A. Criswell, Chun Ye

The paper introduces demuxlet, an algorithm that uses natural genetic variation to multiplex single-cell RNA-seq samples, enabling accurate sample identification and doublet detection in pooled experiments.

Nature Biotechnology · Dec 11, 2017Peer-reviewedBioinformatics