Author

Simone Marsili

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:chromatin & epigenetic regulation· 1 Approach:comparative / phylogenetic analysis· 1 Assay:DNA methylation· 1 Organism:human· 1 Assay:protein sequence· 1 Research Focus:protein structure prediction· 1

Frequent Co-Authors

Alfonso ValenciaiD· 2 shared David JuaniD· 2 shared Daniel RicoiD· 1 shared David Ochoa· 1 shared Enrique Carrillo de Santa PauiD· 1 shared Ho-Ryun Chung· 1 shared Juan Rodriguez-Rivas· 1 shared Juliane Perner· 1 shared

Activity by Year

2015-2016 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 30 mutual co-author links

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2 shared papersBioinformatics

Alfonso ValenciaORCID

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2 papers

Recent·Most cited

Conservation of co-evolving protein interfaces bridges prokaryote-eukaryote homologies in the twilight zone

Juan Rodriguez-Rivas, Simone Marsili, David Juan, Alfonso Valencia

The paper uses co-evolutionary analysis to predict conserved protein-protein interfaces between prokaryotes and eukaryotes, even when sequences are distantly related.

bioRxiv · Aug 5, 2016Bioinformatics

Epigenomic co-localization and co-evolution reveal a key role for 5hmC as a communication hub in the chromatin network of ESCs

David Juan, Juliane Perner, Enrique Carrillo de Santa Pau, Simone Marsili, David Ochoa, Ho-Ryun Chung, Martin Vingron, Daniel Rico, Alfonso Valencia

The paper identifies 5hmC as a central hub in the chromatin network of ESCs, linking DNA demethylation to chromatin remodeling and pluripotency factors through epigenomic co-localization and co-evolution analysis.

bioRxiv · Dec 3, 2015Bioinformatics