Author

Somalee Datta

Stanford University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Scientific Communication & Education· 1

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 2 Research Focus:variant calling· 2 Assay:whole-exome sequencing· 2 Assay:whole-genome sequencing· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Organism:human· 1

Frequent Co-Authors

Keith Bettinger· 2 shared Michael Snyder· 2 shared Ben Lehmann· 1 shared Cuiping Pan· 1 shared Euan Angus AshleyiD· 1 shared Gregory McInnes· 1 shared Jonathan Bingham· 1 shared Jonathan K. Pritchard· 1 shared

Activity by Year

2015-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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2 shared papersScientific Communication & Education

Keith Bettinger

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Author profile →

4 papers

Recent·Most cited

Benchmarking workflows to assess performance and suitability of germline variant calling pipelines in clinical diagnostic assays.

Vandhana Krishnan, Sowmi Utiramerur, Zena Ng, Somalee Datta, Michael P. Snyder, Euan Angus Ashley

The paper benchmarks germline variant calling pipelines in clinical assays using cloud-based workflows and GIAB reference samples to evaluate performance across genomic regions and variant types.

BMC Bioinformatics · Feb 24, 2021Peer-reviewedBioinformatics

SciReader*: A Cloud-based Recommender System for Biomedical Literature

Priya Desai, Natalie Telis, Ben Lehmann, Keith Bettinger, Jonathan K. Pritchard, Somalee Datta

SciReader* provides a cloud-based recommender system using topic modeling and machine learning to help biomedical researchers find recent, relevant, and high-quality publications.

bioRxiv · May 30, 2018 · PreprintScientific Communication & Education

Interactive Analytics for Very Large Scale Genomic Data

Cuiping Pan, Nicole Deflaux, Gregory McInnes, Michael Snyder, Jonathan Bingham, Somalee Datta, Philip Tsao

The paper presents an interactive analytics framework for large-scale genomic data using cloud infrastructure and Dremel, enabling faster analysis and retrieval of biological information.

bioRxiv · Dec 24, 2015

Practical Guidelines for Secure Cloud Computing using Genomic Data

Somalee Datta, Keith Bettinger, Michael Snyder

The paper discusses cloud security challenges for genomic data and highlights the need for secure practices in large-scale genomics studies.

bioRxiv · Dec 20, 2015Bioinformatics