Author

T. Ruttink

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 4 Evolutionary Biology· 3 Ecology· 2

Signature Assays, Organisms & Methods

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Organism:plant (other)· 9 Approach:statistical model· 8 Assay:DNA methylation· 5 Assay:bulk RNA-seq· 3 Research Focus:clustering· 3 Research Focus:gene regulatory network inference· 3 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2

Frequent Co-Authors

O. Honnay· 4 shared P. Stoffelen· 4 shared A. Staelens· 3 shared F. Vandelook· 3 shared J. Depecker· 3 shared L. Verleysen· 3 shared A. Haegeman· 2 shared E. Tshimi· 2 shared

Activity by Year

2018-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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4 shared papersEcology

O. Honnay

Mutual co-authors in cluster

Author profile →

9 papers

Recent·Most cited

Cultivated Robusta coffee meets wild Coffea canephora: Evidence of cultivated-wild hybridisation in the Democratic Republic of the Congo

J. Depecker, L. Verleysen, R. Bollen, J. Asimonyio, Y. Hatangi, J.-L. Kambale, I. Mwanga Mwanga, T. Ebele, B. Dheda, P. Stoffelen, T. Ruttink, F. Vandelook, O. Honnay

The paper examines hybridisation between cultivated Robusta coffee and its wild relative Coffea canephora in DR Congo, finding limited but detectable gene flow from cultivated to wild populations.

bioRxiv · Oct 30, 2023 · PreprintEcology

Characterization of the genetic composition and establishment of a core collection for the INERA Robusta coffee (Coffea canephora) field genebank from the Democratic Republic of the Congo

L. Verleysen, R. Bollen, J. L. Kambale, E. Tshimi, B. Ntumba Katshela, J. Depecker, V. Poncet, D. M. Assumani, F. Vandelook, P. Stoffelen, O. Honnay, T. Ruttink

The paper characterizes the genetic composition of a Robusta coffee collection and proposes core collections to conserve genetic diversity.

bioRxiv · Jun 15, 2023Plant Biology

Industrial chicory genome gives insight into the molecular time table of anther development and male sterility

E. Waegneer, S. M. Rombauts, J. Baert, N. Dauchot, A. De Keyser, T. Eeckhaut, A. Haegeman, C. Liu, O. Maudoux, C. Notte, A. Staelens, J. Van der Veken, K. Van Laere, T. Ruttink

This study presents a reference genome for industrial chicory and identifies key genes and molecular processes in anther development and male sterility using transcriptomic and morphological analyses.

Frontiers in Plant Science · Jun 13, 2023Peer-reviewedPlant Biology

Genetic diversity and structure in wild Robusta coffee (Coffea canephora A. Froehner) populations in Yangambi (DR Congo) and their relation with forest disturbance

J. Depecker, L. Verleysen, J. Asimonyio, Y. Hatangi, J.-L. Kambale, I. Mwanga Mwanga, E. Tshimi, B. Dhed'a, Y. Bawin, A. Staelens, P. Stoffelen, T. Ruttink, F. Vandelook, O. Honnay

The paper quantifies genetic diversity and structure in wild Robusta coffee populations in DR Congo and links these to forest disturbance and regeneration.

bioRxiv · Oct 7, 2022Ecology

SMAP design: A multiplex PCR amplicon and gRNA design tool to screen for natural and CRISPR-induced genetic variation

W. Develtere, E. Waegneer, K. Debray, S. Van Glabeke, S. Maere, T. Ruttink, T. B. Jacobs

SMAP design is a tool that generates specific primers and gRNAs for genetic variation screens, validated across plant and non-plant genomes.

bioRxiv · Jul 21, 2022Plant Biology

Phenotypic variation and quantitative trait loci for resistance to southern anthracnose and clover rot in red clover

L. A. Frey, T. Vleugels, T. Ruttink, F. X. Schubiger, M. Pegard, L. Skot, C. Grieder, B. Studer, I. Roldan-Ruiz, R. Koelliker

This study identifies genetic loci associated with resistance to southern anthracnose and clover rot in red clover using genome-wide association analysis.

bioRxiv · May 23, 2022Plant Biology

Phylogenomic analysis clarifies the evolutionary origin of Coffea arabica L.

Y. Bawin, T. Ruttink, A. Staelens, A. Haegeman, P. Stoffelen, J.-C. I. Mwanga Mwanga, I. Roldan-Ruiz, O. Honnay, S. Janssens

The paper determines the evolutionary origin of Coffea arabica by analyzing genetic distances and reconstructing a phylogenetic tree, identifying C. canephora and C. eugenioides as its progenitors.

bioRxiv · Mar 22, 2020Evolutionary Biology

Utilization of tissue ploidy level variation in de novo transcriptome assembly of Pinus sylvestris

D. Ojeda, T. Mattila, T. Ruttink, S. Kujala, K. Karkkainen, J.-P. Verta, T. Pyhajarvi

This study evaluates the impact of using haploid tissue in de novo transcriptome assembly of Pinus sylvestris to reduce allelic redundancy and improve transcriptome quality.

bioRxiv · Dec 13, 2018Evolutionary Biology

Pleistocene climate changes explain large-scale genetic variation in a dominant grassland species, Lolium perenne L.

J.L. Blanco-Pastor, S. Manel, P. Barre, A.M. Roschanski, E. Willner, K.J. Dehmer, M. Hegarty, H. Muylle, T. Ruttink, I. Roldán-Ruiz, T. Ledauphin, A. Escobar-Gutierrez, J.P. Sampoux

This study shows that Pleistocene climate changes, not recent agriculture, shaped the large-scale genetic variation in Lolium perenne across Europe.

bioRxiv · Sep 11, 2018 · PreprintEvolutionary Biology