Author

Teppei Shimamura

Department of Computational and Systems Biology, Division of Biological Data Science

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Biology Disciplines

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Bioinformatics· 1

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Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Organism:human· 1 Assay:scATAC-seq· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Chikara MizukoshiiD· 1 shared Haruka Hisose· 1 shared Shuto HayashiiD· 1 shared Taichi HibiiD· 1 shared Yasuhiro KojimaiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

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5 top collaborators · 10 mutual co-author links

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1 shared paperBioinformatics

Chikara MizukoshiORCID

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1 paper

Recent·Most cited

CloneVI: A deep generative model for deciphering the relationships between cell state and mitochondrial genotype

Taichi Hibi, Yasuhiro Kojima, Shuto Hayashi, Haruka Hisose, Chikara Mizukoshi, Teppei Shimamura

CloneVI infers clonal structure from cell states in single-cell RNA-seq and ATAC-seq data, linking mitochondrial DNA mutations to specific cell states.

bioRxiv · Nov 4, 2026 · PreprintBioinformatics