Computing Linkage Disequilibrium Aware Genome Embeddings using Autoencoders
Gizem Taş, Timo Westerdijk, Eric O. Postma, Wouter van Rheenen, Mark K. Bakker, Kristel R. van Eijk, Maarten Kooyman, Ahmad Al Khleifat, Alfredo Iacoangeli, Nicola Ticozzi, Johnathan Cooper‐Knock, Marta Gromicho, Siddharthan Chandran, Karen E. Morrison, Pamela J. Shaw, , Marleen Balvert
The paper introduces a method to compress genetic data using autoencoders that leverage linkage disequilibrium structure, achieving high reconstruction accuracy while reducing data size.
Bioinformatics · May 17, 2024Peer-reviewedGenomics