Author

Tong Ye

University of Science and Technology of China

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Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Assay:long-read sequencing· 1 Research Focus:protein structure prediction· 1 Assay:scRNA-seq· 1 Research Focus:sequence-to-function modeling· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Feng ZhangiD· 1 shared Fenghe TangiD· 1 shared Haobin CheniD· 1 shared Heqin ZhuiD· 1 shared Peng XiongiD· 1 shared Ruifeng LiiD· 1 shared S Kevin ZhouiD· 1 shared Xin LiiD· 1 shared

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2025-2025 · peak 1/yr

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9 top collaborators · 36 mutual co-author links

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1 shared paperBioinformatics

Feng ZhangORCID

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1 paper

Recent·Most cited

An open structure-guided RNA foundation model for generalizable prediction

Heqin Zhu, Ruifeng Li, Feng Zhang, Haobin Chen, Fenghe Tang, Tong Ye, Xin Li, Yunjie Gu, Peng Xiong, S Kevin Zhou

This paper introduces structRFM, a structure-guided RNA foundation model that improves RNA function prediction and structural inference through pre-training on sequence-structure pairs.

bioRxiv · Aug 6, 2025 · PreprintBioinformatics