Author

Usha Bhalla

Harvard University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1

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Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:dimensionality reduction· 1 Organism:human· 1 Assay:spatial transcriptomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Dan Freeman· 1 shared Grace GuoiD· 1 shared Hanspeter PfisteriD· 1 shared Jeremy L. MuhlichiD· 1 shared Johannes KnitteliD· 1 shared Peter Karl SorgeriD· 1 shared Simon WarcholiD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

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7 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Dan Freeman

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1 paper

Recent·Most cited

SEAL: Spatially-resolved Embedding Analysis with Linked Imaging Data

Simon Warchol, Grace Guo, Johannes Knittel, Dan Freeman, Usha Bhalla, Jeremy L. Muhlich, Peter Karl Sorger, Hanspeter Pfister

SEAL integrates spatial imaging context with dimensionality reduction embeddings to improve interpretation of complex datasets through interactive visualization and feature importance analysis.

IEEE Transactions on Visualization and Computer Graphics · Dec 11, 2025Peer-reviewedBioinformatics