Author
Karolinska Institutet
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
4 papers
Recent·Most cited
Hassan Sadiq, Patrick Truong, Maximilian Danielsson, Venkatesh Kumar, Hedwig Nora Nordlinder, Darren Patrick Martin, Ben Murrell
difFUBAR provides a scalable Bayesian method to compare adaptive evolution across different branch sets in phylogenetic trees, showing computational gains and moderate statistical benefits over existing methods.
bioRxiv · May 19, 2025 · PreprintBioinformatics
Arné de Klerk, Phillip Swanepoel, Rentia Lourens, Mpumelelo Zondo, Isaac Abodunran, Spyros Lytras, Oscar A. MacLean, David L. Robertson, Sergei L. Kosakovsky Pond, Jordan D. Zehr, Venkatesh Kumar, Michael J. Stanhope, Gordon W. Harkins, Ben Murrell, Darren Patrick Martin
The paper identifies conserved recombination patterns across six coronavirus subgenera and links them to transcriptional regulatory sequences and sequence features.
Virus Evolution · Jun 14, 2022Peer-reviewedBioinformatics
Venkatesh Kumar, Thomas Vollbrecht, Mark Chernyshev, Sanjay Mohan, Brian Hanst, Nicholas Bavafa, Antonia Lorenzo, Nikesh M. Kumar, Robert Ketteringham, Kemal Eren, Michael Golden, Michelli F. Oliveira, Ben Murrell
This paper introduces two methods for denoising long-read amplicon sequencing data, achieving higher accuracy than existing methods.
Nucleic Acids Research · Jul 24, 2019Peer-reviewedBioinformatics
Kemal Eren, Steven Weaver, Robert Ketteringham, Morné Valentyn, Melissa Laird Smith, Venkatesh Kumar, Sanjay Mohan, Sergei L. Kosakovsky Pond, Ben Murrell
FLEA is a tool for analyzing long-read sequencing data of HIV-1 env, improving accuracy in reconstructing viral sequences and analyzing evolutionary dynamics.
PLoS Computational Biology · Dec 13, 2018Peer-reviewedBioinformatics