Author

Xichen Wu

Helmholtz Munich

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:machine learning (classical)· 2 Assay:scRNA-seq· 2 Research Focus:benchmarking· 1 Research Focus:deconvolution· 1 Organism:human· 1 Research Focus:perturbation response prediction· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Fabian Joachim TheisiD· 2 shared Lukas HeumosiD· 2 shared Alejandro Tejada-LapuertaiD· 1 shared Altana NamsaraevaiD· 1 shared Amir Ali MoinfariD· 1 shared Antonia SchumacheriD· 1 shared Calliope Athena DendrouiD· 1 shared Charlotte Rich‐GriffiniD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersBioinformatics

Fabian Joachim TheisORCID

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2 papers

Recent·Most cited

Pertpy: an end-to-end framework for perturbation analysis

Lukas Heumos, Yuge Ji, L T May, Tessa D. Green, Stefan Peidli, Xinyue Zhang, Xichen Wu, Johannes Ostner, Antonia Schumacher, Karin Hrovatin, Michaela Müller, Faye Chong, Gregor Sturm, Alejandro Tejada-Lapuerta, Emma Dann, , Fabian Joachim Theis

Pertpy provides a modular framework for analyzing large-scale perturbation single-cell experiments, offering tools for metadata annotation and perturbation distance calculations.

Nature Methods · Dec 31, 2025Peer-reviewedBioinformatics

hadge: a comprehensive pipeline for donor deconvolution in single cell

Fabiola Curion, Xichen Wu, Lukas Heumos, Mariana Gonzales, Lennard Halle, Melissa Grant‐Peters, Charlotte Rich‐Griffin, Hing‐Yuen Yeung, Calliope Athena Dendrou, Herbert B. Schiller, Fabian Joachim Theis

hadge combines hashing and genotype-based deconvolution methods to recover previously discarded cells in single-cell data.

bioRxiv · Jul 23, 2023 · PreprintBioinformatics