Author

Xinye Jia

Zhejiang Lab

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Organism:plant (other)· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:snRNA-seq· 1 Approach:statistical model· 1

Frequent Co-Authors

Bilian Qian· 1 shared Chao Liu· 1 shared Chao Qin· 1 shared Chengwei LiangiD· 1 shared Chunling Zhang· 1 shared Chunyan XuiD· 1 shared Dongxu Li· 1 shared Duoyuan CheniD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperGenomics

Bilian Qian

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2 papers

Recent·Most cited

OneGenome-Rice (OGR): A genomic foundation model for rice

Bilian Qian, Chengwei Liang, Chao Qin, Chao Liu, Chunling Zhang, Chunyan Xu, Dongxu Li, Guirong Xue, Hang He, He Zhang, Huiying He, Duoyuan Chen, Jiwei Xu, Junyang Zhang, Jian Sun, , Ziqing Deng

OneGenome-Rice (OGR) is a genomic foundation model for rice pre-trained on 422 genomes, outperforming existing models in 11 tasks and enabling downstream applications like trait analysis and gene expression prediction.

bioRxiv · May 29, 2026 · PreprintGenomics

Single-nucleus transcriptome analyses uncover a dynamic transcriptional landscape of soybean roots in response to soybean cyst nematode infection

Panpan Bai, Xinye Jia, Luying Chen, Yatao Han, Shaojie Han, Lin Weng, Xianzhong Feng

This study uses snRNA-seq to analyze soybean root transcriptomes during SCN infection, identifying syncytial cells and resistance mechanisms.

bioRxiv · Aug 6, 2025 · PreprintPlant Biology