Author
Beijing Jiaotong University
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
5 papers
Recent·Most cited
Baonan Wang, Chang Lei, Huanyu Lin, 石少康, Xixian Ma, Weishun Zeng, Kai Yuan, Xumin Ni, Shuhua Xu
ArchaicSeeker 3.0 detects archaic introgression using deep learning, outperforming existing methods in precision, recall, and F1 score across diverse genomic contexts and population sizes.
bioRxiv · May 6, 2026 · PreprintBioinformatics
Xiong Yang, Xumin Ni, Ying Zhou, Wei Guo, Kai Yuan, Shuhua Xu
AdmixSim generates synthetic admixture data under complex scenarios, enabling accurate simulation of population admixture dynamics and facilitating comparative studies.
Frontiers in Genetics · Dec 3, 2020Peer-reviewedBioinformatics
Xumin Ni, Kai Yuan, Xiong Wen Yang, Qidi Feng, Wei Guo, Zhi-Ming Ma, Shuhua Xu
The paper introduces MultiWaver, a method to infer multiple-wave admixture histories from ancestral tracks, validated on real datasets.
Heredity · Jan 22, 2018Peer-reviewedGenetics
Ying Zhou, Kai Yuan, Yaoliang Yu, Xumin Ni, Pengtao Xie, Eric P. Xing, Shuhua Xu
This paper introduces MALDmef, a method for inferring multiple-wave admixture by modeling LD decay with multiple exponential functions, showing improved accuracy over existing methods in simulated and real data.
bioRxiv · Sep 14, 2015 · PreprintEvolutionary Biology
Xumin Ni, Xiong Yang, Wei Guo, Kai Yuan, Ying Zhou, Zhiming Ma, Shuhua Xu
This paper derives the length distribution of ancestral tracks under a general admixture model and applies it to infer population histories with high accuracy.
bioRxiv · Jul 28, 2015Genetics