Author

Zachary Johnson

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Biology Disciplines

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Genomics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:metagenomics· 1

Frequent Co-Authors

Ananya AnmangandlaiD· 1 shared Andrew D. Price· 1 shared Byron W. PurseiD· 1 shared Elizabeth Archie· 1 shared Erdem SendinciD· 1 shared Eric M. DavisiD· 1 shared Gudrun Stengel· 1 shared Hua Yu· 1 shared

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1 shared paperGenomics

Ananya AnmangandlaORCID

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2 papers

Recent·Most cited

Mapping multiple RNA modifications simultaneously by proximity barcode sequencing

Erdem Sendinc, Hua Yu, Yu Fu, Jerome Santos, Zachary Johnson, Justin R. Kirstein, Jiani Niu, Michael B. Chabot, Vito Adrian Cantu, Željko Džakula, Quan Lam, Ananya Anmangandla, Timothy S. Burcham, Eric M. Davis, Zachary D. Miles, , Gudrun Stengel

This paper introduces EpiPlex, a method for simultaneous mapping of multiple RNA modifications, demonstrating its application in analyzing m6A and inosine levels in HEK293T cells.

bioRxiv · Oct 9, 2024 · PreprintGenomics

Common methods for fecal sample storage in field studies yield consistent signatures of individual identity in microbiome sequencing data

Ran Blekhman, Karen Tang, Elizabeth Archie, Luis Barreiro, Zachary Johnson, Mark Wilson, Jordan Kohn, Michael Yuan, Laurence Gesquiere, Laura Grieneisen, Jenny Tung

The paper compares fecal sample storage methods in rhesus macaques and finds that individual identity signatures are consistent across methods, suggesting stored samples are suitable for microbiome analysis.

bioRxiv · Feb 4, 2016Genomics