Topic · Computational Theory and Mathematics · Computer Science
OpenAlex topic; a paper is listed when OpenAlex scores it at least 0.5 for this topic.
4 papers
Joshua Forrest, Vijay Rajagopal, Michael P. H. Stumpf, Michael Pan
BondGraphs.jl provides a Julia framework for energy-based modelling in systems biology, enforcing thermodynamic constraints through bond graphs.
Bioinformatics · Sep 19, 2023Peer-reviewedSystems Biology
The paper extends an energy-based bond graph model to include advection, demonstrating its application in pharmacokinetic models and physiological systems.
Journal of The Royal Society Interface · Oct 1, 2022Peer-reviewedSystems Biology
Peter Cudmore, Michael Pan, P.J. Gawthrop, Edmund J. Crampin
This paper introduces BondGraphTools, a Python library for constructing and analysing energy-based models in biochemistry using bond graphs, ensuring consistency with physical laws.
The European Physical Journal E · Dec 1, 2021Peer-reviewedSystems Biology
Christopher Schölzel, Valeria Blesius, Gernot Ernst, Andreas Dominik
The paper identifies desirable characteristics for mathematical modeling languages in systems biology to improve model reuse and proposes guidelines for their implementation.
npj Systems Biology and Applications · Jun 3, 2021Peer-reviewedSystems Biology