Author

A. Farmer

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 3

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Research Focus:gene regulatory network inference· 2 Organism:plant (other)· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Organism:Arabidopsis· 1 Research Focus:chromatin & epigenetic regulation· 1 Assay:DNA methylation· 1

Frequent Co-Authors

A. d'Hont· 1 shared A. Delteil· 1 shared A. Dereeper· 1 shared A. Palkovic· 1 shared B. Hufnagel· 1 shared C. Chaintreuil· 1 shared C. H. Diepenbrock· 1 shared C. Klopp· 1 shared

Activity by Year

2020-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperPlant Biology

A. d'Hont

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3 papers

Recent·Most cited

Sequence characterization of T, Bip, and Phbw demonstrates the role of MYB-bHLH-WD40 complexes and temperature in common bean seed color pattern formation

T. Parker, T. Bolt, T. Williams, R. V. Penmetsa, M. Mulube, A. Palkovic, C. N. Jochua, M. d. M. Rubio Wilhelmi, S. Lo, G. Bornhorst, L. Tian, K. Kamfwa, S. Hokin, A. Farmer, C. H. Diepenbrock, P. Gepts

This study identifies mutations in MYB-bHLH-WD40 complex genes and shows temperature affects seed color patterns in common bean.

bioRxiv · Sep 23, 2023 · PreprintPlant Biology

Genetics of nodulation in Aeschynomene evenia uncovers new mechanisms of the rhizobium-legume symbiosis

J. Quilbe, L. Lamy, L. Brottier, P. Leleux, J. Fardoux, R. Rivallan, T. Benichou, R. Guyonnet, M. Becana, I. Villar, O. Garsmeur, B. Hufnagel, A. Delteil, D. Gully, C. Chaintreuil, , J.-F. ARRIGHI

This study identifies key genes involved in nodulation in Aeschynomene evenia, revealing new mechanisms of rhizobium-legume symbiosis through genetic and transcriptomic analyses.

bioRxiv · Nov 26, 2020Plant Biology

The impact of chromatin remodeling on gene expression at the single cell level in Arabidopsis thaliana

A. Farmer, S. Thibivilliers, K. H. Ryu, J. Schiefelbein, M. Libault

The paper uses sNucRNA-seq and sNucATAC-seq to study chromatin remodeling's impact on gene expression in Arabidopsis root nuclei, revealing cell-type-specific chromatin accessibility patterns.

bioRxiv · Jul 27, 2020 · PreprintPlant Biology