Author

A. Ignatieva

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Evolutionary Biology· 5

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 4 Assay:whole-genome sequencing· 4 Research Focus:phylogenetics / evolution· 3 Organism:virus· 3 Approach:deep learning· 2 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

J. Hein· 3 shared P. A. Jenkins· 2 shared B. Jeffery· 1 shared C. L. Murall· 1 shared D. S. Palmer· 1 shared E. Hayman· 1 shared I. Guthrie· 1 shared J. Kelleher· 1 shared

Activity by Year

2021-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersEvolutionary Biology

J. Hein

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

The length of haplotype blocks and signals of structural variation in reconstructed genealogies

A. Ignatieva, M. Favero, J. Koskela, J. Sant, S. R. Myers

The paper evaluates genealogy reconstruction methods, identifies recombination rate variation, and discovers novel structural variants in human genomes.

bioRxiv · Jul 11, 2023Evolutionary Biology

A Pandemic-Scale Ancestral Recombination Graph for SARS-CoV-2

S. H. Zhan, Y. Wong, A. Ignatieva, K. Eaton, I. Guthrie, B. Jeffery, D. S. Palmer, C. L. Murall, S. Otto, J. Kelleher

The paper infers an Ancestral Recombination Graph for 2.48 million SARS-CoV-2 genomes to account for recombination, providing a more accurate representation of viral genealogy than traditional trees.

bioRxiv · Jun 8, 2023 · PreprintEvolutionary Biology

KwARG: Parsimonious reconstruction of ancestral recombination graphs with recurrent mutation

A. Ignatieva, R. B. Lyngso, P. A. Jenkins, J. Hein

KwARG reconstructs ancestral recombination graphs using a parsimony-based greedy algorithm to minimize recombination and mutation events in genetic datasets.

Bioinformatics · Oct 11, 2021Peer-reviewedEvolutionary Biology

Recoverability of Ancestral Recombination Graph Topologies

E. Hayman, A. Ignatieva, J. Hein

The paper investigates the probability of accurately reconstructing ancestral recombination graph topologies under the coalescent with recombination and gene conversion, finding low accuracy for SARS-CoV-2-like parameters.

bioRxiv · Oct 10, 2021Evolutionary Biology

Ongoing recombination in SARS-CoV-2 revealed through genealogical reconstruction

A. Ignatieva, J. Hein, P. A. Jenkins

This study identifies ongoing recombination in SARS-CoV-2 using genealogical reconstruction and statistical analysis of sequencing data from England and South Africa.

bioRxiv · Jan 21, 2021Evolutionary Biology