Author

A. Tkatchenko

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Biophysics· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Research Focus:host-pathogen & immune response· 1 Approach:mechanistic / dynamical model· 1 Assay:protein structure· 1 Approach:statistical model· 1

Frequent Co-Authors

A. Fouquier dHerouel· 1 shared A. Skupin· 1 shared D. M. Rogers· 1 shared J. M. Delgado· 1 shared N. Duro· 1 shared P. May· 1 shared S. A. Pandit· 1 shared S. Varma· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 16 mutual co-author links

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1 shared paperBioinformatics

A. Fouquier dHerouel

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2 papers

Recent·Most cited

Mechanism-based classification of SARS-CoV-2 Variants by Molecular Dynamics Resembles Phylogenetic Tree

T. Arns, A. Fouquier dHerouel, P. May, A. Tkatchenko, A. Skupin

This paper introduces a Persistence Score to classify SARS-CoV-2 variants based on molecular dynamics, showing it groups variants into clinically relevant subgroups with higher sensitivity than traditional methods.

bioRxiv · Nov 28, 2023 · PreprintBioinformatics

Molecular basis for SARS-CoV-2 spike affinity for human ACE2 receptor

J. M. Delgado, N. Duro, D. M. Rogers, A. Tkatchenko, S. A. Pandit, S. Varma

This study identifies the molecular basis for SARS-CoV-2's higher affinity for human ACE2 compared to SARS-CoV using molecular dynamics simulations and free energy calculations.

bioRxiv · Sep 10, 2020 · PreprintBiophysics