Author

Abigail Kamke

Kansas State University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:metagenomics· 2 Organism:mouse· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Organism:plant (other)· 1

Frequent Co-Authors

Qinghong Ran· 3 shared Soumyadev SarkariD· 3 shared Brandon Lee PlattneriD· 2 shared Hallie Wiechman· 2 shared Kourtney Monk· 2 shared Leah Heeren· 2 shared Sonny T. M. LeeiD· 2 shared Sophia Pogranichniy· 2 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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Curved chords = mutual co-authorship

3 shared papersMicrobiology

Qinghong Ran

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Eubacterium rectale detoxification mechanism increases resilience of the gut environment

Tanner G. Richie, Hallie Wiechman, Brooke Vogt, Carson Ingold, Leah Heeren, Abigail Kamke, Sophia Pogranichniy, Kourtney Monk, Trey Summers, Qinghong Ran, Soumyadev Sarkar, Brandon Lee Plattner, Ashley M. Sidebottom, Eugene B. Chang, Sonny T. M. Lee

This study identifies Eubacterium rectale's detoxification mechanism, showing its ability to reduce ROS and inflammation in gut cells through glutathione production.

Microbiome · Aug 4, 2026Peer-reviewedMicrobiology

Limitation of amino acid availability by bacterial populations during enhanced colitis in IBD mouse model

Tanner G. Richie, Leah Heeren, Abigail Kamke, Sophia Pogranichniy, Kourtney Monk, Trey Summers, Hallie Wiechman, Qinghong Ran, Soumyadev Sarkar, Brandon Lee Plattner, Sonny T. M. Lee

The paper investigates how bacterial populations in an IBD mouse model use sulfur metabolism and host nutrients to drive inflammation and sustain growth.

mSystems · Nov 1, 2023Peer-reviewedGenomics

Bacterial but not fungal rhizosphere communities differ among perennial grass ecotypes under abiotic environmental stress

Soumyadev Sarkar, Abigail Kamke, Kaitlyn Ward, QingHong Ran, Brandi Feehan, Shiva Thapa, Lauren Anderson, Matthew Galliart, Ari Jumpponen, Loretta Johnson, Sonny T M Lee

This study compares bacterial and fungal rhizobiomes across three ecotypes of Andropogon gerardii under drought stress, finding distinct bacterial communities but not fungal ones.

bioRxiv · Nov 15, 2021 · PreprintBioinformatics