Author

Ailey Crow

Howard Hughes Medical Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Neuroscience· 2

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:dimensionality reduction· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Assay:imaging· 1 Organism:mouse· 1

Frequent Co-Authors

Karl A. DeisserothiD· 2 shared Ahmadreza AttarpouriD· 1 shared Andrew S. ClappisoniD· 1 shared Barsin Eshaghi Gharagoz· 1 shared Bojana StefanoviciD· 1 shared Braedyn AuiD· 1 shared Brian HsuehiD· 1 shared Charu RamakrishnaniD· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersNeuroscience

Karl A. DeisserothORCID

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2 papers

Recent·Most cited

Quantitative profiling of whole-brain connectomes at single-axon resolution using deep learning and high-resolution light sheet microscopy

Ahmadreza Attarpour, Misha Raffiee, Tony Xu, Jonas Osmann, Shruti B Patel, Fengqing Yu, Braedyn Au, Andrew S. Clappison, Mahdi Biparva, Rui Zhu, Ailey Crow, Barsin Eshaghi Gharagoz, Matthew W Rozak, Isabelle Aubert, JoAnne McLaurin, , Maged Goubran

This paper introduces MAPL3, a deep learning pipeline for mapping whole-brain connectomes at single-axon resolution, demonstrating its effectiveness in analyzing orbitofrontal cortex circuitry.

bioRxiv · Nov 14, 2025 · PreprintNeuroscience

Dendritic calcium signals in rhesus macaque motor cortex drive an optical brain-computer interface

Eric M. Trautmann, Daniel J. O’Shea, Xulu Sun, James H. Marshel, Ailey Crow, Brian Hsueh, Sam S. Vesuna, Lucas B. Cofer, Gergő Bohner, Will Allen, Isaac Kauvar, Sean Quirin, Matthew MacDougall, Yuzhi Chen, Matthew P. Whitmire, , K.V. Shenoy

This paper demonstrates an optical brain-computer interface (oBCI) using dendritic calcium signals from rhesus macaques during motor tasks, achieving stable decoding of movement direction.

Nature Communications · Jun 17, 2021Peer-reviewedNeuroscience