Author
Cold Spring Harbor Laboratory
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
4 papers
Recent·Most cited
Ammar Tareen, Mahdi Kooshkbaghi, Anna Posfai…·Justin B. Kinney
MAVE-NN learns genotype-phenotype maps from MAVE data by using a neural network-based information-theoretic framework, enabling biophysically interpretable models.
Yixin Hu, Ammar Tareen, Yi-Jun Sheu…·Bruce Stillman
The paper identifies sequence-specificity in DNA replication origins mediated by Orc4 α-helix in S. cerevisiae and links its evolution to gene silencing mechanisms.
Ammar Tareen, Justin B. Kinney
This paper introduces biophysical models of cis-regulation as interpretable neural networks, demonstrating their inference from MPRAs data.
Ammar Tareen, Justin B. Kinney
Logomaker is a Python API for generating publication-quality sequence logos from numerical matrices, with support for customization and vector graphics.