Author

Anne Dodd

Emory University

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Bioinformatics· 1

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Assay:scATAC-seq· 1

Frequent Co-Authors

Alessandro Ferrari· 1 shared Greg C. GibsoniD· 1 shared Margaret A. BrowniD· 1 shared Russell D. WolfingeriD· 1 shared Shi FangiD· 1 shared Subra KugathasaniD· 1 shared Vasantha L. KolachalaiD· 1 shared

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1 shared paperBioinformatics

Alessandro Ferrari

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1 paper

Recent·Most cited

snATAC-Express infers Gene Expression from Prioritized Chromatin Accessibility Peaks using Machine Learning

Margaret A. Brown, Alessandro Ferrari, Anne Dodd, Shi Fang, Vasantha L. Kolachala, Subra Kugathasan, Russell D. Wolfinger, Greg C. Gibson

The paper develops a machine learning pipeline to infer gene expression from chromatin accessibility peaks using single nuclear multi-omic data, finding that important peaks are enriched in GWAS variants for inflammatory bowel disease and lupus.

bioRxiv · Jul 25, 2025 · PreprintBioinformatics