Author

Alessandro Ferrari

Georgia Institute of TechnologyPrimary ORCID profile (0000-0003-2397-7079 · 2 papers)Unclaimed ORCID profile · follow to get notified of new preprints

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Alessandro FerrariiD2 papers · Policlinico San Matteo Fondazione

Biology Disciplines

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Bioinformatics· 1

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Assay:scATAC-seq· 1

Frequent Co-Authors

Anne Dodd· 1 shared Greg C. GibsoniD· 1 shared Margaret A. BrowniD· 1 shared Russell D. WolfingeriD· 1 shared Shi FangiD· 1 shared Subra KugathasaniD· 1 shared Vasantha L. KolachalaiD· 1 shared

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2025-2025 · peak 1/yr

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7 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Anne Dodd

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1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintJul 25, 2025

snATAC-Express infers Gene Expression from Prioritized Chromatin Accessibility Peaks using Machine Learning

Margaret A. Brown, Alessandro Ferrari, Anne Dodd…·Greg C. Gibson

The paper develops a machine learning pipeline to infer gene expression from chromatin accessibility peaks using single nuclear multi-omic data, finding that important peaks are enriched in GWAS variants for inflammatory bowel disease and lupus.

DOI 10.1101/2025.07.25.666784

humanscATAC-seq

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