Author

Anthony Agudelo

Women & Infants Hospital of Rhode Island

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Genetic & Genomic Medicine· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Organism:human· 2 Assay:proteomics· 2 Assay:whole-genome sequencing· 2 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Alper UzuniD· 3 shared George A. TollefsoniD· 3 shared James F. PadburyiD· 3 shared Jessica S. SchusteriD· 3 shared Amal Al-Rajhi· 1 shared Andrew Thomas DeWaniD· 1 shared Anika Akkiraju· 1 shared Ashok RagavendraniD· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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3 shared papersBioinformatics

Alper UzunORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Plasma proteomics reveals divergent sex-specific senescence and bone biology signatures across neurodegenerative diseases

Siddharth Kaipa, Ting Zhai, Sai Rama Krishna Meka, Patricia Morán Losada, Zihuai He, Divya Channappa, Hamilton Se‐Hwee Oh, Jarod Rutledge, Michael Zeineh, Anthony Agudelo, Ramesh V. Nair, Edward N. Wilson, Mounica Bandela, Keerthana Raghuraman, Amal Al-Rajhi, , Vidyani Suryadevara

This study identifies sex-specific changes in bone and senescence-related proteins in neurodegenerative diseases using plasma proteomics.

bioRxiv · May 27, 2026 · PreprintNeuroscience

Protein Interaction Networks Define the Genetic Architecture of Preterm Birth

Alper Uzun, Jessica S. Schuster, Joan P. Stabila, Valeria Zarate, George A. Tollefson, Anthony Agudelo, Prachi Kothiyal, Wendy S.W. Wong, James F. Padbury

The paper identifies subgroups of preterm birth patients with shared protein interaction networks and pathway enrichments using sequencing and bioinformatic analysis.

Scientific Reports · Jan 10, 2022Peer-reviewedGenetic & Genomic Medicine

Proteinarium: Multi-Sample Protein-Protein Interaction Analysis and Visualization Tool

David Armanious, Jessica S. Schuster, George A. Tollefson, Anthony Agudelo, Andrew Thomas DeWan, Sorin Istrail, James F. Padbury, Alper Uzun

Proteinarium analyzes and visualizes protein-protein interaction networks across multiple samples to identify disease-related gene clusters.

Genomics · Jul 20, 2020Peer-reviewedBioinformatics

VIVA (VIsualization of VAriants): A VCF file visualization tool

George A. Tollefson, Jessica S. Schuster, Fernando Gelin, Anthony Agudelo, Ashok Ragavendran, Isabel Acevedo-Restrepo, Paul Stey, James F. Padbury, Alper Uzun

VIVA is a VCF file visualization tool that allows users to interactively evaluate, share, and generate publication-quality graphics from genomic data.

Scientific Reports · Sep 2, 2019Peer-reviewedBioinformatics