Author

Asim Bera

University of Washington

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 1 Bioengineering· 1

Signature Assays, Organisms & Methods

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Research Focus:protein design· 2 Assay:protein structure· 2 Approach:statistical model· 2 Approach:deep learning· 1 Approach:diffusion model· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:protein sequence· 1

Frequent Co-Authors

Alex KangiD· 2 shared David A. BakeriD· 2 shared Hannah NguyeniD· 2 shared Johnny MendozaiD· 2 shared Aiko MuraishiiD· 1 shared Avery Yang· 1 shared Beibei Zhao· 1 shared Carolina MölleriD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersBioengineering

Alex KangORCID

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2 papers

Recent·Most cited

Complex enzyme active site scaffolding by iteratively detuned catalytic guidance

Tingli Qian, Weijin Wang, Shilong Gao, Aiko Muraishi, Beibei Zhao, Davi Nakajima An, Fanglei Xue, Max Kazman, Johnny Mendoza, Hannah Nguyen, Asim Bera, Alex Kang, Avery Yang, Wenzhao Dai, Jia Liang, , David A. Baker

CaGE alternates guided structure prediction with sequence redesign, fading guidance each cycle, so sequences recover complex catalytic sites unaided; designed nonheme-iron and PLP-dependent enzymes were active.

bioRxiv · Oct 16, 2026 · PreprintBioengineering✦ In-depth digest

Programming N-linked glycan composition through de novo protein design

Margaret C. Lunn-Halbert, Joel D. Allen, Rohith Krishna, Манченко Анна, Xinting Li, Edward D. B. Lopatto, Jerome S. Pinkner, Carolina Möller, Woody Ahern, Johnny Mendoza, Alex Kang, Hannah Nguyen, Emily Joyce, Asim Bera, Scott J. Hultgren, , Neil P. King

This paper develops a computational method to design glycoproteins with controlled N-linked glycan composition by encoding glycan location and structure into amino acid sequences.

bioRxiv · Oct 8, 2026 · PreprintBiochemistry