Author

Avery Yang

University of Washington

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Bioengineering· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:deep learning· 1 Approach:diffusion model· 1 Approach:experimental assay· 1 Research Focus:protein design· 1 Assay:protein sequence· 1 Assay:protein structure· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Aiko MuraishiiD· 1 shared Alex KangiD· 1 shared Asim Bera· 1 shared Beibei Zhao· 1 shared Davi Nakajima AniD· 1 shared David A. BakeriD· 1 shared Fanglei XueiD· 1 shared Frank DiMaioiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperBioengineering

Aiko MuraishiORCID

Mutual co-authors in cluster

Author profile →

1 paper

Recent·Most cited

Complex enzyme active site scaffolding by iteratively detuned catalytic guidance

Tingli Qian, Weijin Wang, Shilong Gao, Aiko Muraishi, Beibei Zhao, Davi Nakajima An, Fanglei Xue, Max Kazman, Johnny Mendoza, Hannah Nguyen, Asim Bera, Alex Kang, Avery Yang, Wenzhao Dai, Jia Liang, , David A. Baker

CaGE alternates guided structure prediction with sequence redesign, fading guidance each cycle, so sequences recover complex catalytic sites unaided; designed nonheme-iron and PLP-dependent enzymes were active.

bioRxiv · Oct 16, 2026 · PreprintBioengineering✦ In-depth digest