Author

Athanasios V. Vasilakos

University of Agder

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:variant effect prediction· 2 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Assay:Hi-C· 1 Assay:protein sequence· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1

Frequent Co-Authors

Fuyi LiiD· 1 shared Geoffrey I. WebbiD· 1 shared Jiangning SongiD· 1 shared Kai Wang· 1 shared Meng Yuan· 1 shared Mingqing WangiD· 1 shared Seiya Imoto· 1 shared Sihan CheniD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperBioinformatics

Fuyi LiORCID

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2 papers

Recent·Most cited

Decoding Cell-type Specific Gene Regulation with CellReg3D by Integrating DNA Large Language Models and 3D Genome Structure

Xiaoyu Wang, Yumeng Zhang, Sihan Chen, Seiya Imoto, Geoffrey I. Webb, Athanasios V. Vasilakos, Fuyi Li, Kai Wang, Jiangning Song

CellReg3D integrates DNA language models and 3D genome structure to model cell-type-specific gene regulation, achieving state-of-the-art performance in predicting epigenetic marks and gene expression.

bioRxiv · Nov 4, 2026 · PreprintBioinformatics

Improving Variant Effect Prediction by Steering Sparse Mechanistic Features in Protein Language Models

Mingqing Wang, Meng Yuan, Athanasios V. Vasilakos, Yonghong He, Zhixiang Ren

This paper improves variant effect prediction by modifying protein language models with sparse mechanistic features, achieving significant performance gains across multiple datasets.

bioRxiv · May 15, 2026 · PreprintBioinformatics