Author

Benjamin Statz

University of California, Los Angeles

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Eleazar EskiniD· 2 shared Alex ZelikovskyiD· 1 shared Angela Ka-Mei LamiD· 1 shared Brian L. HilliD· 1 shared Dat DuongiD· 1 shared Dennis Montoya· 1 shared Douglas Yao· 1 shared Gargi DayamaiD· 1 shared

Activity by Year

2018-2019 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBioinformatics

Eleazar EskinORCID

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2 papers

Recent·Most cited

Challenges and recommendations to improve the installability and archival stability of omics computational tools

Serghei Mangul, Thiago S. Mosqueiro, Richard J. Abdill, Dat Duong, Keith Mitchell, Varuni Sarwal, Brian L. Hill, Jaqueline Brito, Russell Littman, Benjamin Statz, Angela Ka-Mei Lam, Gargi Dayama, Laura Grieneisen, Lana S. Martin, Jonathan Flint C, , Ran Blekhman

The paper assesses the installability and archival stability of computational biology tools, finding many are inaccessible or hard to install, and recommends policy changes to improve these aspects.

PLoS Biology · Jun 20, 2019Peer-reviewedBioinformatics

Profiling immunoglobulin repertoires across multiple human tissues by RNA Sequencing

Serghei Mangul, Igor Mandric, Harry Taegyun Yang, Nicolas Strauli, Dennis Montoya, Jeremy Rotman, Will Van Der Wey, Jiem R. Ronas, Benjamin Statz, Douglas Yao, Alex Zelikovsky, Roberto Spreafico, Sagiv Shifman, Noah Zaitlen, Maura Rossetti, , Eleazar Eskin

The paper develops ImReP, a computational method to profile TCR and BCR repertoires from RNA-seq data, creating a large atlas of immunological sequences across 53 tissues.

bioRxiv · Nov 6, 2018 · PreprintImmunology