Author

Serghei Mangul

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

Click to filter author papers

Bioinformatics· 3 Immunology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 4 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Assay:long-read sequencing· 2 Research Focus:variant calling· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

Alex ZelikovskyiD· 3 shared Eleazar EskiniD· 3 shared Harry Taegyun YangiD· 2 shared Alexander ArtyomenkoiD· 1 shared Benjamin Statz· 1 shared David Koslicki· 1 shared Dennis Montoya· 1 shared Douglas Yao· 1 shared

Activity by Year

2016-2018 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersBioinformatics

Alex ZelikovskyORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Profiling immunoglobulin repertoires across multiple human tissues by RNA Sequencing

Serghei Mangul, Igor Mandric, Harry Taegyun Yang, Nicolas Strauli, Dennis Montoya, Jeremy Rotman, Will Van Der Wey, Jiem R. Ronas, Benjamin Statz, Douglas Yao, Alex Zelikovsky, Roberto Spreafico, Sagiv Shifman, Noah Zaitlen, Maura Rossetti, , Eleazar Eskin

The paper develops ImReP, a computational method to profile TCR and BCR repertoires from RNA-seq data, creating a large atlas of immunological sequences across 53 tissues.

bioRxiv · Nov 6, 2018 · PreprintImmunology

Long single-molecule reads can resolve the complexity of the Influenza virus composed of rare, closely related mutant variants

Alexander Artyomenko, Nicholas C Wu, Serghei Mangul, Eleazar Eskin, Ren Sun, Alex Zelikovsky

This paper introduces 2SNV, a method to accurately reconstruct rare viral mutant variants from single-molecule sequencing data with high sensitivity and accuracy.

Journal of Computational Biology · Jun 1, 2017Peer-reviewedBioinformatics

Reference-free comparison of microbial communities via de Bruijn graphs

Serghei Mangul, David Koslicki

This paper introduces a reference-free method for comparing microbial communities using de Bruijn graphs and Earth Mover's Distance, showing it can distinguish between case and control samples in a coronary artery calcification study.

bioRxiv · May 24, 2016 · PreprintBioinformatics

HapIso : An Accurate Method for the Haplotype-Specific Isoforms Reconstruction from Long Single-Molecule Reads

Serghei Mangul, Harry Taegyun Yang, Farhad Hormozdiari, Elizabeth Tseng, Alex Zelikovsky, Eleazar Eskin

HapIso reconstructs haplotype-specific isoforms from long single-molecule reads by clustering reads into parental alleles despite high error rates.

bioRxiv · May 9, 2016Bioinformatics