SNVPhyl: A Single Nucleotide Variant Phylogenomics pipeline for microbial genomic epidemiology
Aaron Petkau, Philip Mabon, Cameron Sieffert, Natalie Knox, Jennifer Cabral, Mariam Iskander, Mark Iskander, Kelly A. Weedmark, Rahat Zaheer, Lee S. Katz, Celine A. Nadon, Aleisha R. Reimer, Eduardo Napoleon Taboada, Robert Gerald Beiko, William Hsiao, , Gary Van Domselaar
SNVPhyl is a phylogenomics pipeline that identifies SNVs and constructs whole-genome phylogenies from WGS data, showing high sensitivity and specificity in outbreak detection.
Microbial Genomics · Jun 7, 2017Peer-reviewedBioinformatics