Author

Jennifer Cabral

Public Health Agency of Canada

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 4

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 3 Approach:experimental assay· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:phylogenetics / evolution· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Philip MaboniD· 4 shared Gary Van DomselaariD· 3 shared Aaron Petkau· 2 shared Eduardo Napoleon TaboadaiD· 2 shared Eric Enns· 2 shared Fiona S. L. BrinkmaniD· 2 shared Morag Graham· 2 shared Natalie KnoxiD· 2 shared

Activity by Year

2017-2018 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 44 mutual co-author links

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4 shared papersBioinformatics

Philip MabonORCID

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Author profile →

4 papers

Recent·Most cited

The Integrated Rapid Infectious Disease Analysis (IRIDA) Platform

Thomas C Matthews, Franklin Bristow, Emma Griffiths, Aaron Petkau, Josh Adam, Damion Dooley, Peter Kruczkiewicz, John Curatcha, Jennifer Cabral, Daniel Fornika, Geoffrey L. Winsor, Mélanie Courtot, Claire Bertelli, A. Roudgar, Pedro Feijão, , Gary Van Domselaar

A decentralized open-source web platform lets public health labs run outbreak sequencing pipelines on local compute, keeping data under their own governance while still exchanging results between instances.

bioRxiv · Jul 31, 2018 · PreprintBioinformatics

Bioconda: A sustainable and comprehensive software distribution for the life sciences

Björn Grüning, Ryan Dale, Andreas Sjödin, Brad Chapman, Jillian Rowe, Christopher H. Tomkins-Tinch, Renan Valieris, Adam Caprez, Bérénice Batut, Mathias Haudgaard, Thomas Cokelaer, Kyle A. Beauchamp, Brent S. Pedersen, Youri Hoogstrate, Anthony Bretaudeau, , Matthew L. Workentine

Bioconda provides a sustainable, comprehensive distribution of bioinformatics software using Conda for reproducible analysis across platforms.

Nature Methods · Jun 25, 2018Peer-reviewedBioinformatics

SNVPhyl: A Single Nucleotide Variant Phylogenomics pipeline for microbial genomic epidemiology

Aaron Petkau, Philip Mabon, Cameron Sieffert, Natalie Knox, Jennifer Cabral, Mariam Iskander, Mark Iskander, Kelly A. Weedmark, Rahat Zaheer, Lee S. Katz, Celine A. Nadon, Aleisha R. Reimer, Eduardo Napoleon Taboada, Robert Gerald Beiko, William Hsiao, , Gary Van Domselaar

SNVPhyl is a phylogenomics pipeline that identifies SNVs and constructs whole-genome phylogenies from WGS data, showing high sensitivity and specificity in outbreak detection.

Microbial Genomics · Jun 7, 2017Peer-reviewedBioinformatics

Plasmid Profiler: Comparative Analysis of Plasmid Content in WGS Data

Adrian Zetner, Jennifer Cabral, Laura F. Mataseje, Natalie Knox, Philip Mabon, Michael R. Mulvey, Gary Van Domselaar

Plasmid Profiler is a pipeline for comparative analysis of plasmid content in WGS data without requiring de novo assembly, using read mapping to a plasmid reference database.

bioRxiv · Mar 28, 2017 · PreprintBioinformatics