Author

Chencheng Xu

Ludwig Cancer ResearchPrimary ORCID profile (0000-0002-2262-6966 · 2 papers)Unclaimed ORCID profile · follow to get notified of new preprints

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Same name, identified by ORCID

Chencheng XuiD2 papers · King Abdullah University of Science and Technology

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:drug response / drug discovery· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Chaolin ZhangiD· 1 shared David Scott WishartiD· 1 shared Ehud HerbstiD· 1 shared Fei Wang· 1 shared Hao CheniD· 1 shared Michael A. SkinnideriD· 1 shared Suying BaoiD· 1 shared Tao JiangiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperBioinformatics

Chaolin ZhangORCID

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2 papers

Recent·Most cited

Confronting spurious evaluations of computational methods in small molecule mass spectrometry

Vishu Gupta, Chencheng Xu, Ehud Herbst, Fei Wang, David Scott Wishart, Michael A. Skinnider

The paper exposes a flaw in evaluating small molecule MS/MS models by showing trivial models can perform well due to dataset biases and proposes a new benchmark to assess true model capability.

bioRxiv · Jul 14, 2026 · PreprintBioinformatics

Reference-informed prediction of alternative splicing and splicing-altering mutations from sequences

Chencheng Xu, Suying Bao, Ye Wang, Wenxing Li, Hao Chen, Yufeng Shen, Tao Jiang, Chaolin Zhang

DeltaSplice predicts splicing-altering mutations and alternative splicing from genomic sequences, outperforming existing methods and identifying disease-related variants in neurodevelopmental disorders.

Genome Research · Jul 1, 2024Peer-reviewedBioinformatics