Author

Daniel M Ferrer

University of California San Diego

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Microbiology· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:mouse· 2 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:metagenomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Guillaume UrtechoiD· 2 shared Mark Holton· 2 shared Alexander Richter· 1 shared Arielle D. TrippiD· 1 shared Ileana Villamil· 1 shared Minshen Yang· 1 shared Purushottam D. DixitiD· 1 shared Zetian ZhangiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

8 top collaborators · 20 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersMicrobiology

Guillaume UrtechoORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Culturomics-Guided Precision FMT Enables Stable Antibiotic-Independent Engraftment via Metabolic Niche Targeting

Daniel M Ferrer, Mark Holton, Minshen Yang, Ileana Villamil, Guillaume Urtecho

This paper develops a culturomics-guided FMT framework that enables stable, antibiotic-independent engraftment by targeting metabolic niches in recipient microbiomes.

bioRxiv · Oct 26, 2026 · PreprintMicrobiology

Metagenome-scale Modeling to Assess Microbiome Metabolic Complementarity for Precision Microbiota Transplantation Therapies

Zetian Zhang, Mark Holton, Daniel M Ferrer, Arielle D. Tripp, Alexander Richter, Purushottam D. Dixit, Guillaume Urtecho

This paper develops a metagenome-scale metabolic model to predict FMT outcomes by assessing donor-recipient metabolic compatibility in IBS patients.

Gut Microbes · Sep 2, 2026Peer-reviewedMicrobiology