Author

Daniel Spindlow

Cranfield University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Developmental Biology· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Assay:bulk RNA-seq· 3 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Research Focus:genome assembly· 2 Organism:human· 2 Organism:plant (other)· 2 Assay:whole-genome sequencing· 2

Frequent Co-Authors

Andrew J. ThompsoniD· 2 shared Austin G SmithiD· 2 shared Corentin MolitoriD· 2 shared Fady R. MoharebiD· 2 shared Giuliano Giuseppe StirparoiD· 2 shared H. C. PrasannaiD· 2 shared Jennifer NicholsiD· 2 shared Pedro M Fidalgo de AlmeidaiD· 2 shared

Activity by Year

2020-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersBioinformatics

Andrew J. ThompsonORCID

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Author profile →

4 papers

Recent·Most cited

A chromosome-level genome assembly of Solanum chilense, a tomato wild relative associated with resistance to salinity and drought

Corentin Molitor, Tomasz J. Kurowski, Pedro M Fidalgo de Almeida, Zoltán Kevei, Daniel Spindlow, Steffimol Rose Chacko Kaitholil, Justice U. Iheanyichi, H. C. Prasanna, Andrew J. Thompson, Fady R. Mohareb

This paper presents a chromosome-level genome assembly of Solanum chilense and identifies variants associated with drought and salt resistance that could improve tomato breeding.

Frontiers in Plant Science · Mar 7, 2024Peer-reviewedBioinformatics

Human Naive Epiblast Cells Possess Unrestricted Lineage Potential

Ge Guo, Giuliano Giuseppe Stirparo, Stanley E. Strawbridge, Daniel Spindlow, Jian Ping Yang, James Clarke, Anish Dattani, Ayaka Yanagida, Meng Amy Li, Sam Myers, Buse Nurten Özel, Jennifer Nichols, Austin G Smith

The paper shows human naive epiblast cells can generate trophectoderm and trophoblast cells, unlike mouse embryonic stem cells, and identifies key regulators of this process.

Cell stem cell · Apr 7, 2021Peer-reviewedDevelopmental Biology

De novo genome assembly and transcriptome analysis for the drought and salt resistant Solanum sitiens

Corentin Molitor, Tomasz J. Kurowski, Pedro M Fidalgo de Almeida, Pramod Eerolla, Daniel Spindlow, Sarvesh Pratap Kashyap, Bijendra Kumar Singh, H. C. Prasanna, Andrew J. Thompson, Fady R. Mohareb

This paper presents a de novo genome and transcriptome assembly for Solanum sitiens, identifying genetic features related to drought and salt resistance.

Bioinformatics · Jan 23, 2021Peer-reviewedBioinformatics

Capture of mouse and human stem cells with features of formative pluripotency

Masaki Kinoshita, Michael Barber, William M. Mansfield, Yingzhi Cui, Daniel Spindlow, Giuliano Giuseppe Stirparo, Sabine Dietmann, Jennifer Nichols, Austin G Smith

The paper identifies and characterizes formative stem cells in mice and humans, showing they have unique transcriptional and epigenetic features compared to naive and primed pluripotent cells.

Cell stem cell · Dec 2, 2020Peer-reviewedDevelopmental Biology