Author

David Catoe

SLAC National Accelerator Laboratory

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:human· 2 Assay:whole-genome sequencing· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1

Frequent Co-Authors

Arend SidowiD· 2 shared Jennifer McDanieliD· 2 shared Justin M Zook· 2 shared Marc SalitiD· 2 shared Noah SpiesiD· 2 shared Ziming WengiD· 2 shared Alex Bishara· 1 shared Alex Hastie· 1 shared

Activity by Year

2015-2023 · peak 1/yr

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10 top collaborators · 39 mutual co-author links

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2 shared papersGenomics

Arend SidowORCID

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3 papers

Recent·Most cited

Single cell quantification of ribosome occupancy in early mouse development

Hakan Özadam, Tori Tonn, Crystal M. Han, Alia Segura, Ian Hoskins, Shilpa J Rao, Vighnesh Ghatpande, Duc Tran, David Catoe, Marc Salit, Can Cenik

This paper develops Ribo-ITP to measure ribosome occupancy in single cells during early mouse development, revealing differential translation efficiency and allele-specific ribosome engagement.

Nature · Jun 21, 2023Peer-reviewedDevelopmental Biology

Genome-wide reconstruction of complex structural variants using read clouds

Noah Spies, Ziming Weng, Alex Bishara, Jennifer McDaniel, David Catoe, Justin M Zook, Marc Salit, Robert B West, Serafim Batzoglou, Arend Sidow

This paper introduces GROC-SVs, a method for detecting and assembling structural variants using read cloud data, showing improved specificity and enabling complex breakpoint reconstruction in cancer samples.

bioRxiv · Sep 10, 2016Genomics

Extensive sequencing of seven human genomes to characterize benchmark reference materials

Justin M Zook, David Catoe, Jennifer McDaniel, Lindsay Vang, Noah Spies, Arend Sidow, Ziming Weng, Yuling Liu, Chris Mason, Noah Alexander, Dhruva Chandramohan, Elizabeth Henaff, Feng Chen, Erich Jaeger, Ali Moshrefi, , Sofia K

The paper presents extensive sequencing data from seven human genomes to serve as benchmark reference materials for improving sequencing technologies and variant calling.

bioRxiv · Dec 23, 2015Genomics