Author

David Koslicki

Primary ORCID profile (0000-0002-0640-954X · 36 papers)Unclaimed ORCID profile · follow to get notified of new preprints

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David KoslickiiD36 papers · Pennsylvania State University

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Research Focus:clustering· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Organism:human· 1

Frequent Co-Authors

Daniel Falush· 1 shared Serghei Mangul· 1 shared

Activity by Year

2016-2016 · peak 2/yr

Co-Author Collaboration Network

2 top collaborators · 0 mutual co-author links

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1 shared paperBioinformatics

Daniel Falush

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2 papers

Recent·Most cited

Reference-free comparison of microbial communities via de Bruijn graphs

Serghei Mangul, David Koslicki

This paper introduces a reference-free method for comparing microbial communities using de Bruijn graphs and Earth Mover's Distance, showing it can distinguish between case and control samples in a coronary artery calcification study.

bioRxiv · May 24, 2016 · PreprintBioinformatics

MetaPalette: A K-mer painting approach for metagenomic taxonomic profiling and quantification of novel strain variation

David Koslicki, Daniel Falush

MetaPalette uses k-mer palettes to profile metagenomic samples, quantifying known and novel organisms with high accuracy.

bioRxiv · Feb 17, 2016Bioinformatics