Author

David Lopez

University Hospital of Geneva

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Neuroscience· 1 Pathology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:bulk RNA-seq· 1 Approach:comparative / phylogenetic analysis· 1 Research Focus:deconvolution· 1 Organism:E. coli· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:imaging· 1

Frequent Co-Authors

Brian B. NadeliD· 2 shared Amirhossein AsadianiD· 1 shared Andrea Maccari· 1 shared Camille D'Ancona· 1 shared Colette BoëxiD· 1 shared Daniel HuberiD· 1 shared Dennis J. MontoyaiD· 1 shared Fanny Sollander· 1 shared

Activity by Year

2017-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersBioinformatics

Brian B. NadelORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

iSleep: Continuous, binocular pupil tracking in sleep and reduced consciousness for physiological monitoring, predictions and interventions

Özge Yüzgeç, Guillaume Legendre, Amirhossein Asadian, Yesica Gloria, L. Bayer, Quentin Tourdot, Sebastien Pellat, Sahsa Novozhilova, Camille D'Ancona, Marina Ulanova, Mateusz Kecik, Andrea Maccari, David Lopez, Laura Licini, Gaël Nguyen Tang, , Daniel Huber

iSleep tracks binocular pupil dynamics during sleep and anesthesia, revealing correlations with brain activity and enabling state prediction and nociception monitoring.

bioRxiv · Jun 13, 2025 · PreprintNeuroscience

The Gene Expression Deconvolution Interactive Tool (GEDIT): Accurate Cell Type Quantification from Gene Expression Data

Brian B. Nadel, David Lopez, Dennis J. Montoya, Feiyang Ma, Hannah B. Waddel, Misha M. Khan, Serghei Mangul, Matteo A. Pellegrini

GEDIT estimates cell type abundances from gene expression data, outperforming existing tools across multiple platforms and tissue types.

GigaScience · Jan 29, 2021Peer-reviewedBioinformatics

A Novel Uropathogenic Escherichia Coli Genome (strain D3) and Comparative Analysis with Other Uropathogenic and Nonpathogenic Strains

Brian B. Nadel, Shawn J. Cokus, Marco Morselli, Laura J. Marinelli, David Lopez, Robert L. Modlin, Joseph Distefano, Matteo Pellegrini

The paper sequences and analyzes the genome of a uropathogenic E. coli strain, identifying pathogenicity-associated genes and D3-specific transposable elements.

bioRxiv · Oct 4, 2017 · PreprintPathology