Author

E. Karimi

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cell Biology· 1 Ecology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Organism:E. coli· 1

Frequent Co-Authors

A. Arabzadeh· 1 shared A. Siegel· 1 shared B. Fiset· 1 shared C. Boyen· 1 shared C. Frioux· 1 shared D. F. Quail· 1 shared E. Corre· 1 shared E. Fremy· 1 shared

Activity by Year

2020-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperCell Biology

A. Arabzadeh

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Machine learning meets classical computer vision for accurate cell identification

E. Karimi, M. Rezanejad, B. Fiset, L. Perus, S. A. C. McDowell, A. Arabzadeh, G. Beugnot, P. Siegel, M.-C. Guiot, D. F. Quail, K. Siddiqi, L. A. Walsh

This paper introduces CIRCLE, a hybrid cell detection model that outperforms existing tools for accurate cell identification in 2D images.

bioRxiv · Feb 27, 2022 · PreprintCell Biology

Changing microbial activities during low salinity acclimation in the brown alga Ectocarpus subulatus

H. KleinJan, G. Caliafano, M. Aite, E. Fremy, C. Frioux, E. Karimi, E. Corre, T. Wichard, A. Siegel, C. Boyen, S. M. Dittami

This study examines how microbial communities in the brown alga Ectocarpus subulatus change during low salinity acclimation, identifying potential bacterial contributions to stress tolerance.

bioRxiv · Apr 13, 2021 · PreprintEcology

Isolation and genome sequencing of 14 Spongia sp. bacterial associates expands the taxonomic and functional breadth of the cultivatable marine sponge microbiome

E. Karimi, R. Costa

The paper isolates and sequences 14 bacterial strains from a marine sponge, revealing new genera and functional genes related to symbiosis and secondary metabolites.

bioRxiv · Mar 20, 2020 · PreprintMicrobiology