Author

Ekaterina Tkachenko

Stanford Medicine

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:human· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Research Focus:variant calling· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Ami Siddharth BhattiD· 2 shared Tessa M. AndermanniD· 2 shared Alex Bishara· 1 shared Christina M. Wood-Bouwens· 1 shared Christine Handy· 1 shared Eli L. Moss· 1 shared Fiona B. TamburiniiD· 1 shared Fiona SenchynaiD· 1 shared

Activity by Year

2018-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersBioinformatics

Ami Siddharth BhattORCID

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2 papers

Recent·Most cited

Strain-resolved microbiome sequencing reveals mobile elements that drive bacterial competition on a clinical timescale

Alex Bishara, Eli L. Moss, Ekaterina Tkachenko, Joyce B. Kang, Soumaya Zlitni, Rebecca Neal Culver, Tessa M. Andermann, Ziming Weng, Christina M. Wood-Bouwens, Christine Handy, Hanlee P. Ji, Serafim Batzoglou, Ami Siddharth Bhatt

This study uses read cloud sequencing to identify mobile elements in Bacteroides caccae that contribute to antibiotic resistance in a patient's microbiome over time.

Genome Medicine · May 29, 2020Peer-reviewedBioinformatics

Precision Identification of Diverse Bloodstream Pathogens from the Gut Microbiome

Fiona B. Tamburini, Tessa M. Andermann, Ekaterina Tkachenko, Fiona Senchyna, Niaz Banaei, Ami Siddharth Bhatt

The paper develops StrainSifter to identify concordant bacterial strains between bloodstream isolates and gut microbiota using whole genome sequencing.

Nature Medicine · Oct 8, 2018Peer-reviewedGenomics