Author

Eli L. Moss

Stanford University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 3 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Organism:human· 4 Approach:experimental assay· 3 Assay:metagenomics· 3 Research Focus:differential expression· 2 Research Focus:genome assembly· 2 Approach:statistical model· 2 Research Focus:drug response / drug discovery· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

Ami Siddharth BhattiD· 4 shared Alex Bishara· 2 shared Serafim BatzoglouiD· 2 shared Ziming WengiD· 2 shared Alma E. ParadaiD· 1 shared Anne DekasiD· 1 shared Arend SidowiD· 1 shared Christina M. Wood-Bouwens· 1 shared

Activity by Year

2017-2020 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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4 shared papersGenomics

Ami Siddharth BhattORCID

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4 papers

Recent·Most cited

Strain-resolved microbiome sequencing reveals mobile elements that drive bacterial competition on a clinical timescale

Alex Bishara, Eli L. Moss, Ekaterina Tkachenko, Joyce B. Kang, Soumaya Zlitni, Rebecca Neal Culver, Tessa M. Andermann, Ziming Weng, Christina M. Wood-Bouwens, Christine Handy, Hanlee P. Ji, Serafim Batzoglou, Ami Siddharth Bhatt

This study uses read cloud sequencing to identify mobile elements in Bacteroides caccae that contribute to antibiotic resistance in a patient's microbiome over time.

Genome Medicine · May 29, 2020Peer-reviewedBioinformatics

Generating closed bacterial genomes from long-read nanopore sequencing of microbiomes

Eli L. Moss, Dylan G. Maghini, Ami Siddharth Bhatt

The paper introduces a method to generate closed bacterial genomes from nanopore long-read sequencing of microbiomes, achieving nine finished genomes including a closed genome of Prevotella copri.

Nature Biotechnology · Feb 10, 2020Peer-reviewedGenomics

Culture-free generation of microbial genomes from human and marine microbiomes

Alex Bishara, Eli L. Moss, Mikhail Kolmogorov, Alma E. Parada, Ziming Weng, Arend Sidow, Anne Dekas, Serafim Batzoglou, Ami Siddharth Bhatt

This paper introduces a read cloud metagenomic sequencing approach combined with a new assembler, Athena, to generate high-quality microbial genome drafts from human and marine microbiomes without culturing.

Nature Biotechnology · Oct 15, 2018Peer-reviewedGenomics

Long-term taxonomic and functional divergence from donor bacterial strains following fecal microbiota transplantation in immunocompromised patients

Eli L. Moss, Shannon B. Falconer, Tkachenko Ei, Mingjie Wang, Hannah K. Systrom, Jasmin Mahabamunuge, David A. Relman, Elizabeth L. Hohmann, Ami Siddharth Bhatt

This study examines how bacterial composition and function change over a year after fecal microbiota transplantation in immunocompromised patients, finding limited long-term donor strain persistence and complex functional shifts.

PLoS ONE · Aug 21, 2017Peer-reviewedGenomics