Author

Emily Schueddig

University of Kansas Medical Center

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 1 Bioinformatics· 1 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Devin C. KoestleriD· 2 shared Alastair Mark ThompsoniD· 1 shared Allison M. AripoliiD· 1 shared Andrew K. GodwiniD· 1 shared Ashley I. HuppeiD· 1 shared Brahian Cano UrregoiD· 1 shared Camron Smith· 1 shared Carol J. FabianiD· 1 shared

Activity by Year

2026-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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2 shared papersCancer Biology

Devin C. KoestlerORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Cellular stemness identifies high-risk ductal carcinoma in situ and offers a therapeutic interception opportunity

Emily Schueddig, Veena Kochat, Emre Arslan, Y. Dallas, P. Yang, William Pedron, Z G Li, Reagan Henry, Jerome Lin, Mahinur Mattohti, Rashna Madan, Timothy A. Fields, S. Golem, S. A. Khan, Jamie Lynn Wagner, , Fariba Behbod

This study identifies stemness features in luminal hormone-responsive cells within DCIS that correlate with invasive progression and shows that targeting FOXA1 reduces tumor growth.

bioRxiv · May 16, 2026 · PreprintCancer Biology

Proton FLASH Exposure Preserves Gut Commensal Microbiomes and Spares Intestinal Stem Cells

Rishi Man Chugh, Payel Bhanja, Emily Schueddig, Jufri Setianegara, Yuting Lin, Kenny Guida, Shujah Rehman, Stacey A Krepel, Devin C. Koestler, R. C. Chen, Katherine L. Cook, Subhrajit Saha

This study shows proton FLASH irradiation preserves gut microbiota and protects intestinal stem cells in mice, with specific microbial taxa linked to reduced radiation toxicity.

Advanced Science · Mar 28, 2026Peer-reviewedBioengineering

Integrative modeling of read depth and B-allele frequency improves single-cell copy number calling from targeted DNA sequencing panels

Dong Pei, Rachel Griffard-Smith, Brahian Cano Urrego, Emily Schueddig

The paper introduces scPloidyR, a hidden Markov model that jointly models read depth and B-allele frequency for improved single-cell copy number calling from targeted DNA sequencing, showing better performance when allelic information is available.

Computational and Structural Biotechnology Journal · Mar 1, 2026Peer-reviewedBioinformatics