Author

Faizan Malik

City University of New York

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Adam Sivitilli· 1 shared Ana-Maria OproescuiD· 1 shared Anand SwaroopiD· 1 shared Antonio del SoliD· 1 shared Audrey RensoniD· 1 shared Carol Janine SchuurmansiD· 1 shared Colette DehayiD· 1 shared Curtis HuttenhoweriD· 1 shared

Activity by Year

2017-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperDevelopmental Biology

Adam Sivitilli

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2 papers

Recent·Most cited

Proneural genes define ground state rules to regulate neurogenic patterning and cortical folding

Sisu Han, Satoshi Okawa, Grey Wilkinson, Hussein Ghazale, Lata Adnani, Rajiv Dixit, Lígia Tavares, Imrul Faisal, Matthew J. Brooks, Véronique Cortay, Dawn L. Zinyk, Adam Sivitilli, Saiqun Li, Faizan Malik, Yaroslav Ilnytskyy, , Carol Janine Schuurmans

The paper shows Neurog2 and Ascl1 genes regulate cortical progenitor differentiation and folding through Notch signaling in lissencephalic brains.

Neuron · Aug 17, 2021Peer-reviewedDevelopmental Biology

Accessible, curated metagenomic data through ExperimentHub

Edoardo Pasolli, Lucas Schiffer, Paolo Manghi, Audrey Renson, Valerie Obenchain, Duy Tin Truong, Francesco Beghini, Faizan Malik, Marcel Ramos, Jennifer B. Dowd, Curtis Huttenhower, Martin T. Morgan, Nicola Segata, Levi Waldron

The paper introduces curatedMetagenomicData, a resource providing curated metagenomic profiles for analysis in R with minimal bioinformatic expertise.

Nature Methods · Oct 31, 2017Peer-reviewedBioinformatics