Author

Fan Xu

Chongqing University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:deconvolution· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:protein structure prediction· 1 Assay:proteomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Cheng ChangiD· 1 shared Chenhua Zhang· 1 shared Dongling Li· 1 shared Fan YangiD· 1 shared Fuchu He· 1 shared Guibin Wang· 1 shared Jun XiaiD· 1 shared Jun ZhuiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Cheng ChangORCID

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2 papers

Recent·Most cited

π-SPECFormer: A Mass Spectrometry-based Foundation Model for Decoding the Dark Proteome

Tianze Ling, Tao Liu, Fan Xu, Yiming Zhang, Jun Xia, Xiansong Huang, Shaorong Chen, Linhai Xie, Rong Xu, Tingpeng Yang, Kaixuan Li, Guibin Wang, Zhendong Liang, Jun Zhu, Stan Z. Li, , Cheng Chang

This paper introduces π-SPECFormer, a foundation model for mass spectrometry-based proteomics that decodes the dark proteome by pre-training on unannotated spectra and outperforms baselines in peptide sequencing and modification detection.

bioRxiv · Nov 9, 2026 · PreprintBioinformatics

A comprehensive analysis of the potential biological functions and prognostic values of SREBF1 for multiple cancer types including colorectal cancer

Dongling Li, Fan Xu, Qinrui Cai, Ling Lin, Xiaoya Zhou, Li Li, Yao Chen, Tianlin Feng, Yuanxiu Gan, Chenhua Zhang, Fan Yang

This study investigates SREBF1's role in multiple cancers, finding it correlates with prognosis and immune infiltration, and affects cell growth and migration.

bioRxiv · Jul 26, 2024 · PreprintCancer Biology