Author

Geo Pertea

Johns Hopkins University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Approach:statistical model· 2 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Organism:mouse· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

Alyssa C Frazee· 1 shared Andrew E Jaffe· 1 shared Andrew E. JaffeiD· 1 shared Ben LangmeadiD· 1 shared Daianna González‐PadillaiD· 1 shared Dana B. HancockiD· 1 shared James T. HandaiD· 1 shared Jeffrey T Leek· 1 shared

Activity by Year

2015-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Alyssa C Frazee

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2 papers

Recent·Most cited

Molecular impact of nicotine and smoking exposure on the developing and adult mouse brain

Daianna González‐Padilla, Nicholas J. Eagles, Marisol Cano, Geo Pertea, Andrew E. Jaffe, Kristen R. Maynard, Dana B. Hancock, James T. Handa, Keri Martinowich, Leonardo Collado‐Torres

This study compares the molecular effects of prenatal nicotine exposure and maternal smoking during pregnancy on mouse brain development and adulthood, finding distinct gene expression changes in pups but not adults.

Addiction Neuroscience · Jul 15, 2026Peer-reviewedNeuroscience

Flexible analysis of transcriptome assemblies with Ballgown

Alyssa C Frazee, Geo Pertea, Andrew E Jaffe, Ben Langmead, Steven L Salzberg, Jeffrey T Leek

The paper introduces Ballgown, a tool for analyzing transcriptome assemblies from RNA-seq data, focusing on gene structure reconstruction and expression analysis.

Nature Biotechnology · Mar 6, 2015Peer-reviewedBioinformatics