Author

Hamid Mirebrahim

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Immunology· 3 Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 3 Assay:whole-genome sequencing· 3 Research Focus:cell type annotation· 2 Research Focus:clustering· 2 Approach:experimental assay· 2 Assay:scRNA-seq· 2 Assay:ATAC-seq· 1

Frequent Co-Authors

Dinesh KumariD· 3 shared Florian RubeltiD· 3 shared Hahn Zhao· 3 shared Sowmi UtirameruriD· 3 shared Sylvie McNamara· 3 shared Alexandra MorganiD· 2 shared Hosseinali AsgharianiD· 2 shared Matthew Alpert· 2 shared

Activity by Year

2015-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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3 shared papersImmunology

Dinesh KumarORCID

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Author profile →

5 papers

Recent·Most cited

Accurate Reconstruction of Adaptive Immune Receptor Repertoires from FACS-partitioned B and T Cell Subsets

Hahn Zhao, Alexandra Morgan, Michie Yasuda, Hamid Mirebrahim, Ulrich Schlecht, Sylvie McNamara, Rena Adachi, Sandra Siemann, Florian Rubelt, Dinesh Kumar, Sowmi Utiramerur, Ramy Arnaout (263589), Hosseinali Asgharian

The paper develops computational methods to accurately reconstruct adaptive immune receptor repertoires from partitioned B and T cell subsets, showing improved accuracy compared to pooling sub-repertoires.

bioRxiv · Oct 8, 2026 · PreprintImmunology

HuBIE: The Human Blood Immunome Encyclopedia Of TCRs and BCRs in Bloodstream Infections and Cancer

Vahid Akbari, Alexandra Morgan, Michie Yasuda, Ulrich Schlecht, Sylvie McNamara, Hossein Asgharian, Christopher Tam, Rena Adachi, Elisa Contreras, Zhipei Gracie Du, Sandra Siemann, Hahn Zhao, Jeyashree Ashok Balasubramanian, Diane Balallo, Devanshee Sanghvi, , Ramy Arnaout

HuBIE provides a large-scale immune-repertoire dataset from 1,941 participants, revealing ethnic and age-related differences in TCR and BCR diversity and linking immunological diversity to survival in elderly patients.

Frontiers in Immunology · Jun 18, 2026Peer-reviewedImmunology

immunoPETE: A DNA-based integrated B-cell and T-cell receptor profiling platform

Hahn Zhao, Hamid Mirebrahim, Dilduz Telman, Richard Dannebaum, Sylvie McNamara, Ehsan S Tabari, Hai Lin, Florian Rubelt, Jan Berka, Khai Luong, Magdalene Joseph, Richard Bryan, Douglas Ward, Adrian Hayday, Sowmi Utiramerur, , Hosseinali Asgharian

The paper introduces immunoPETE, a DNA-based platform for profiling B and T cell receptors, and demonstrates its performance in immune repertoire analysis and clinical applications.

bioRxiv · Mar 20, 2026 · PreprintImmunology

Genome resources for climate-resilient cowpea, an essential crop for food security

María Muñoz-Amatriaín, Hamid Mirebrahim, Pei Xu, Steve I Wanamaker, MingCheng Luo, Hind Alhakami, Matthew Alpert, Ibrahim Atokple, Benoit Joseph Batieno, Ousmane Boukar, Serdar Bozdag, Ndiaga Cisse, Issa Drabo, Jeffrey D Ehlers, Andrew Farmer, , Timothy J Close

This paper develops genome resources for cowpea to support breeding programs and improve food security in climate-stressed regions.

The Plant Journal · Feb 3, 2017Peer-reviewedGenomics

When Less is More: "Slicing" Sequencing Data Improves Read Decoding Accuracy and De Novo Assembly Quality

Stefano Lonardi, Hamid Mirebrahim, Steve Wanamaker, Matthew Alpert, Gianfranco Ciardo, Denisa Duma, Timothy J Close

This paper shows that ultra-deep sequencing data can degrade decoding and assembly quality, and proposes slicing data to improve results in BAC clone decoding and de novo assembly.

bioRxiv · Jan 3, 2015Bioinformatics